miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|33534813|gb|BX617342.1|BX617342 GGGTGCGTCGGATTGGCCGCCCCACAGCTTGGCCTATCGTTGCGCGCCTTCGTGATGGAGTTTAAGGACGAGCTGCGGGA
CCAGTACACCAAGGCGGACTACAAGCTGCGCGAGATGGAACCATTGCCATTGACGATTCTTCTCAACCCCGAACTGAAAG
TGCTCAACTACGAAAAGGTGATACACACGGAGGCGTGCGAAAGTGTGCGCGGCTATCGGGCGGACGTGCCCCGGTACCGG
GAGATACTGCTGCAGGGCTTCGATGCCACCGGCAACCGGCAAGAGCTGCGACTGAGCGGCTGGAATGCCCGCATTGCCCA
GCACGAGATGGACCATCTGAATGGGATCGTGTACACGGACATTATGAATCGGAAAAGCCTAACCTGCACCTGCTGGCAAG
CGGTCAATGCTAAGAGTGGGCGCATTCAGCTATCGTTTGCCAGCAAATAAATCGGCCACTTGTTAAGCATGTGTTTTGTT
TGTATGTGTGTGTGTATGTCTCCCTTAAA




Most similar to sp|Q9HBH1|DEFM_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9HBH1|DEFM_HUMAN Peptide deformylase, mitochondrial OS=Homo
           sapiens GN=PDF PE=1 SV=1
          Length = 243

 Score =  118 bits (295), Expect = 2e-26
 Identities = 57/135 (42%), Positives = 80/135 (59%)
 Frame = +1

Query: 4   CVGLAAPQLGLSLRAFVMEFKDELRDQYTKADYKLREMEPLPLTILLNPELKVLNYEKVI 183
           CVGL+APQLG+  +   +E  + L  +       LR+MEP PL + +NP L+VL+   V 
Sbjct: 108 CVGLSAPQLGVPRQVLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVT 167

Query: 184 HTEACESVRGYRADVPRYREILLQGFDATGNRQELRLSGWNARIAQHEMDHLNGIVYTDI 363
             E CESV G+ A VPR++ + + G D  G +   + SGW ARI QHEMDHL G ++ D 
Sbjct: 168 FPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDK 227

Query: 364 MNRKSLTCTCWQAVN 408
           M+ ++ T   W  VN
Sbjct: 228 MDSRTFTNVYWMKVN 242